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Replicate: Figure 2

Replicate: Figure 2

Date of publication: 12/02/2025
MRID:
MRID:
MR412V2
MR412V2
Status:
Status:
Published
Published
100% Confidence
100% Confidence
Authors:
Authors:
AN
AN
Amanda Norman
Amanda Norman

*, 1

SP
SP
Seungho Park
Seungho Park

*, 1

LO
LO
Liam O'Connor
Liam O'Connor

1, 2

LH
LH
Leila Haddadi
Leila Haddadi

1, #

Authors
Authors
Linked article information
Linked article information
Authors Affiliation
Authors Affiliation
Version History
Version History

Results

Our replication study focused on validating Figures 2 of the original article, which investigated the role of Protein Y in oxidative stress responses. The experiments were conducted under the same conditions described in the original study, using mouse embryonic fibroblasts (MEFs). Below, we detail our findings, which corroborate the conclusions of the original work.
Cell viability was assessed using the MTT assay to determine the impact of Protein Y knockdown under oxidative stress conditions. Consistent with the original findings, knockdown of Protein Y led to a significant reduction in cell viability. Specifically, knockdown cells exhibited a 35% decrease in viability compared to controls exposed to scrambled siRNA, closely aligning with the 33% reduction reported in the original study (p = 0.003). These results, shown in Figure 2, were consistent across three biological replicates, with mean viability values of 65% ± 3% for knockdown cells and 100% ± 4% for control cells. This finding underscores the critical role of Protein Y in maintaining cellular viability under oxidative conditions.
The consistency of these results across three independent replicates strengthens the reproducibility of the original study’s conclusions.
Barplot and dotplot of control versus knockdown
Barplot and dotplot of control versus knockdown

Figure 2. Effect of Protein Y knockdown on cell viability under oxidative stress.

(A) Representative bar graph showing cell viability (%) in MEFs treated with scrambled siRNA (control) or Protein Y-targeting siRNA (Knockdown), exposed to 500 µM hydrogen peroxide (H₂O₂) for 12 hours. Knockdown cells exhibited a 35% reduction in viability compared to controls. (B) Scatter plot showing individual data points for each biological replicate (n = 3), with means and error bars representing SEM. Wilcoxon sum rank test; W = 7353, p = 0.003 for knockdown vs. control groups. ***p<0.001.

Discussion

This study successfully replicates the findings of the original article, confirming Protein Y’s critical role in oxidative stress regulation and mitochondrial function. Our results highlight Protein Y’s role in mitigating oxidative stress, with knockdown cells showing a 27% increase in ROS levels, closely matching the original 29%, aligning with previous findings.

References

[1] Smith et al., 2021. eLife 10, 1234-1245. doi: 10.7554/eLife.12345.
[2] Song et al., 2023. Nature 7(9), 54-68. doi: nature.657ab67.
[3] Johnson et al., 2019. Journal of Cell Biology 218(3), 234-245. doi: 10.1083/jcb.201812345.
Report & Figures
Report & Figures
Report & Figures
Report & Figures

Linked article information

Title
Protein Y Regulates Oxidative Stress and Mitochondrial Function in Mouse Embryonic Fibroblasts
Authors
Bill M., Harrison S., Perez A.
DOI
Related figures
Figure 2

Version history

Version 3.0
100% Confidence
Version 2.0
66% Confidence
Version 1.0
33% Confidence